PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_323_f_20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 130aa    MW: 14810.3 Da    PI: 4.989
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_323_f_20genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.3e-0880102426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e C+f++rtG Ck+G  CkF+H+
  Neem_323_f_20  80 EDCSFYLRTGCCKFGFYCKFNHP 102
                    89********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0776104IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-580102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-580103IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVDVWEKNTT GTWAEESSWS PKRDKTQFSA QEQEQALVDG FRKNVALNEA ENMCKESDNL  60
DGNGESNGTN HEYPLRPYAE DCSFYLRTGC CKFGFYCKFN HPVRRGFQGV KEMEGGGIVE  120
HQQGQIQCKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469940.14e-42PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
RefseqXP_006469941.16e-43PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2
TrEMBLA0A067DSB24e-42A0A067DSB2_CITSI; Uncharacterized protein
STRINGGLYMA04G36670.15e-16(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2297134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-15C3H family protein